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Investigating the impact of database choice on the accuracy of metagenomic read classification for the rumen microbiome

dc.contributor.authorSmith, Rebecca Louise
dc.contributor.authorGlendinning, Laura
dc.contributor.authorWalker, Alan
dc.contributor.authorWatson, Mick
dc.date.accessioned2022-11-09T00:08:42Z
dc.date.available2022-11-09T00:08:42Z
dc.date.issued2022-11-18
dc.identifier219633981
dc.identifierda67e897-eead-416f-9d7b-12b214517868
dc.identifier36401288
dc.identifier85161227807
dc.identifier.citationSmith , R L , Glendinning , L , Walker , A & Watson , M 2022 , ' Investigating the impact of database choice on the accuracy of metagenomic read classification for the rumen microbiome ' , Animal Microbiome , vol. 4 , 57 . https://doi.org/10.1186/s42523-022-00207-7en
dc.identifier.issn2524-4671
dc.identifier.otherORCID: /0000-0001-5099-8495/work/123848333
dc.identifier.urihttp://aura-test.abdn.ac.uk/handle/2164/19264
dc.descriptionThe Roslin Institute forms part of the Royal (Dick) School of Veterinary Studies, University of Edinburgh. This project was supported by the Biotechnology and Biological Sciences Research Council (BBSRC; BB/S006680/1, BB/R015023/1), including institute strategic program grant BBS/E/D/30002276. R.H.S. is supported by an EASTBIO studentship funded by BBSRC (BB/M010996/1). A.W.W. and the Rowett Institute receive core financial support from the Scottish Government Rural and Environmental Sciences and Analytical Services (SG-RESAS). We would like to thank all of those who were involved in creating and publicly sharing both the Hungate Collection data and the RUG data.en
dc.format.extent3667530
dc.language.isoeng
dc.relation.ispartofAnimal Microbiomeen
dc.subjectMetagenome-assembled genomesen
dc.subjectMetagenomeen
dc.subjectRumenen
dc.subjectMicrobiomeen
dc.subjectReference databasesen
dc.subjectRead classificationen
dc.subjectTaxonomyen
dc.subjectR Medicineen
dc.subjectBiotechnology and Biological Sciences Research Council (BBSRC)en
dc.subjectBB/S006680/1en
dc.subjectBB/R015023/1en
dc.subjectBBS/E/D/30002276en
dc.subjectBB/M010996/1en
dc.subjectRural and Environmental Science and Analytical Services (RESAS)en
dc.subject.lccRen
dc.titleInvestigating the impact of database choice on the accuracy of metagenomic read classification for the rumen microbiomeen
dc.typeJournal articleen
dc.contributor.institutionUniversity of Aberdeen.Rowett Instituteen
dc.description.statusPeer revieweden
dc.identifier.doihttps://doi.org/10.1186/s42523-022-00207-7
dc.identifier.vol4en


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