The structural variation landscape in 492 Atlantic salmon genomes
dc.contributor.author | Bertolotti, Alicia C | |
dc.contributor.author | Layer, Ryan M. | |
dc.contributor.author | Gundappa, Manu Kumar | |
dc.contributor.author | Gallagher, Michael D | |
dc.contributor.author | Pehlivanoglu, Ege | |
dc.contributor.author | Nome, Torfinn | |
dc.contributor.author | Robledo, Diego | |
dc.contributor.author | Kent , Matthew P. | |
dc.contributor.author | Røsæg, Line L. | |
dc.contributor.author | Holen, Matilde M. | |
dc.contributor.author | Mulugeta, Teshome D. | |
dc.contributor.author | Ashton, Thomas J. | |
dc.contributor.author | Hindar, Kjetil | |
dc.contributor.author | Sægrov, Harald | |
dc.contributor.author | Florø-Larsen, Bjørn | |
dc.contributor.author | Erkinaro, Jaakko | |
dc.contributor.author | Primmer, Craig R | |
dc.contributor.author | Bernatchez, Louis | |
dc.contributor.author | Martin, Samuel A M | |
dc.contributor.author | Johnston, Ian A | |
dc.contributor.author | Sandve, Simen R. | |
dc.contributor.author | Lien, Sigbjorn | |
dc.contributor.author | MacQueen, Daniel John | |
dc.date.accessioned | 2020-10-22T15:11:01Z | |
dc.date.available | 2020-10-22T15:11:01Z | |
dc.date.issued | 2020-10-14 | |
dc.identifier | 178242039 | |
dc.identifier | 1fc9cd0c-e666-4b7d-b687-3b48b69df497 | |
dc.identifier | 85092563101 | |
dc.identifier | 33056985 | |
dc.identifier | 000582680400012 | |
dc.identifier.citation | Bertolotti , A C , Layer , R M , Gundappa , M K , Gallagher , M D , Pehlivanoglu , E , Nome , T , Robledo , D , Kent , M P , Røsæg , L L , Holen , M M , Mulugeta , T D , Ashton , T J , Hindar , K , Sægrov , H , Florø-Larsen , B , Erkinaro , J , Primmer , C R , Bernatchez , L , Martin , S A M , Johnston , I A , Sandve , S R , Lien , S & MacQueen , D J 2020 , ' The structural variation landscape in 492 Atlantic salmon genomes ' , Nature Communications , vol. 11 , 5176 . https://doi.org/10.1038/s41467-020-18972-x | en |
dc.identifier.issn | 2041-1723 | |
dc.identifier.uri | https://hdl.handle.net/2164/15273 | |
dc.description | Acknowledgements: The study was supported by Biotechnology and Biological Sciences Research Council grants BB/M016455/1, BB/S004181/1, BBS/E/D/10002070 and BBS/E/D/30002275. Wild Atlantic salmon genome sequencing was funded by the Research Council of Norway (The Aqua Genome project; ref: 221734). We thank Dr. Chris Hollenbeck (formerly Xelect Ltd; currently Texas A&M, USA) for support with Snakemake and Drs. Serap Gonen and Matt Baranski (Mowi AS) for sharing sequencing data. We thank Terese Andersstuen and Dr. Mariann Árnyasi (both NMBU) for organizing the sequencing of wild Atlantic salmon samples. We acknowledge the use of computing clusters at the University of Aberdeen (Maxwell), University of Edinburgh (EDDIE) and CIGENE, NMBU (Orion). Storage resources were provided by the Norwegian National Infrastructure for Research Data (NIRD, project NS9055K). D.J.M. thanks Prof. Seth Grant (University of Edinburgh) for helpful discussion concerning the Atlantic salmon SV outliers and synaptic genes. | en |
dc.format.extent | 16 | |
dc.format.extent | 1879186 | |
dc.language.iso | eng | |
dc.relation.ispartof | Nature Communications | en |
dc.subject | ALIGNMENT | en |
dc.subject | GENETICS | en |
dc.subject | EVOLUTION | en |
dc.subject | BEHAVIOR | en |
dc.subject | FORMAT | en |
dc.subject | TOOL | en |
dc.subject | QH301 Biology | en |
dc.subject | General Physics and Astronomy | en |
dc.subject | General Chemistry | en |
dc.subject | General Biochemistry,Genetics and Molecular Biology | en |
dc.subject | Biotechnology and Biological Sciences Research Council (BBSRC) | en |
dc.subject | BB/M016455/1 | en |
dc.subject | BB/S004181/1 | en |
dc.subject | BBS/E/D/10002070 | en |
dc.subject | BBS/E/D/30002275 | en |
dc.subject | Supplementary Data | en |
dc.subject.lcc | QH301 | en |
dc.title | The structural variation landscape in 492 Atlantic salmon genomes | en |
dc.type | Journal article | en |
dc.contributor.institution | University of Aberdeen.Marine Alliance for Science and Technology for Scotland (MASTS) | en |
dc.contributor.institution | University of Aberdeen.Biological Sciences | en |
dc.contributor.institution | University of Aberdeen.Scottish Fish Immunology Research Centre | en |
dc.description.status | Peer reviewed | en |
dc.identifier.doi | 10.1038/s41467-020-18972-x | |
dc.identifier.url | http://www.scopus.com/inward/record.url?scp=85092563101&partnerID=8YFLogxK | en |